Many-body dispersion energy: Difference between revisions

Latest revision as of 12:02, 20 May 2024

The many-body dispersion energy method (MBD@rsSCS) of Tkatchenko et al.^[1]^[2] is based on the random-phase expression for the correlation energy

E_{c}=\int _{0}^{\infty }{\frac {d\omega }{2\pi }}\mathrm {Tr} \left\{\mathrm {ln} (1-v\chi _{0}(i\omega ))+v\chi _{0}(i\omega )\right\}

whereby the response function $\chi _{0}$ is approximated by a sum of atomic contributions represented by quantum harmonic oscillators. The expression for the dispersion energy used in the VASP k-space implementation of the MBD@rsSCS method (see reference ^[3] for details) is as follows:

E_{\mathrm {disp} }=-\int _{\mathrm {FBZ} }{\frac {d{\mathbf {k} }}{v_{\mathrm {FBZ} }}}\int _{0}^{\infty }{\frac {d\omega }{2\pi }}\,{\mathrm {Tr} }\left\{\mathrm {ln} \left({\mathbf {1} }-{\mathbf {A} }_{LR}^{(0)}(\omega ){\mathbf {T} }_{LR}({\mathbf {k} })\right)\right\}

where ${\mathbf {A} }_{LR}$ is the frequency-dependent polarizability matrix and $\mathbf {T} _{LR}$ is the long-range interaction tensor, which describes the interaction of the screened polarizabilities embedded in the system in a given geometrical arrangement. The components of $\mathbf {A} _{LR}$ are obtained using an atoms-in-molecule approach as employed in the pairwise Tkatchenko-Scheffler method (see references ^[2]^[3] for details). The input reference data for non-interacting atoms can be optionally defined via the parameters VDW_ALPHA, VDW_C6, and VDW_R0 (described by the Tkatchenko-Scheffler method). This method has one free parameter ( $\beta$ ) that must be adjusted for each exchange-correlation functional. The default value of $\beta$ =0.83 corresponds to the PBE functional (GGA=PE). If another functional is used, the value of $\beta$ must be specified via VDW_SR in the INCAR file. The MBD@rsSCS method is invoked by setting IVDW=202. Optionally, the following parameters can be user-defined (the given values are the default ones):

VDW_SR=0.83 : scaling parameter $\beta$
LVDWEXPANSION=.FALSE. : writes the two- to six-body contributions to the MBD dispersion energy in the OUTCAR (LVDWEXPANSION=.TRUE.)
LSCSGRAD=.TRUE. : compute gradients (or not)
VDW_ALPHA, VDW_C6, VDW_R0 : atomic reference (see also Tkatchenko-Scheffler method)
ITIM=-1: if set to +1, apply eigenvalue remapping to avoid unphysical cases where the eigenvalues of the matrix

$\left(1-\mathbf {A} _{LR}^{(0)}(\omega ){\mathbf {T} }_{LR}({\mathbf {k} })\right)$ are non-positive, see reference^[4] for details

Details of the implementation of the MBD@rsSCS method in VASP are presented in reference ^[3].

Mind:

This method requires the use of POTCAR files from the PAW dataset version 52 or later.
The input reference data for non-interacting atoms are available only for elements of the first six rows of the periodic table except of the lanthanides. If the system contains other elements, the user has to provide the free-atomic parameters for all atoms in the system via VDW_ALPHA, VDW_C6 and VDW_R0 (described by the Tkatchenko-Scheffler method) defined in the INCAR file.
The charge-density dependence of gradients is neglected.
This method is incompatible with the setting ADDGRID=.TRUE..
It is essential that a sufficiently dense FFT grid (controlled via NGXF, NGYF and NGZF ) is used in the Tkatchenko-Scheffler method calculation. We strongly recommend to use PREC=Accurate for this type of calculations (in any case, avoid using PREC=Low).
The method sometimes has numerical problems if highly polarizable atoms are located at short distances. In such a case the calculation terminates with an error message Error(vdw\_tsscs\_range\_separated\_k): d\_lr(pp)<=0. Note that this problem is not caused by a bug, but rather it is due to a limitation of the underlying physical model.
Analytical gradients of the energy are implemented (fore details see reference ^[3]) and hence the atomic and lattice relaxations can be performed.
Due to the long-range nature of dispersion interactions, the convergence of energy with respect to the number of k-points should be carefully examined.
A default value for the free-parameter of this method is available only for the PBE (VDW_SR=0.83), PBE0 (VDW_SR=0.85), HSE06 (VDW_SR=0.85), B3LYP (VDW_SR=0.64), and SCAN (VDW_SR=1.12) functionals. If any other functional is used, the value of VDW_SR must be specified in the INCAR file.

References

[tkatchenko:prl:12-1] A. Tkatchenko, R. A. DiStasio, Jr., R. Car, and M. Scheffler, Phys. Rev. Lett. 108, 236402 (2012).

[ambrosetti:jcp:14-2] A. Ambrosetti, A. M. Reilly, and R. A. DiStasio Jr., J. Chem. Phys. 140, 018A508 (2014).

[bucko:jpcm:16-3] T. Bučko, S. Lebègue, T. Gould, and J. G. Ángyán, J. Phys.: Condens. Matter 28, 045201 (2016).

[4] T. Gould, S. Lebègue, J. G. Ángyán, and T. Bučko, J. Chem. Theory Comput. 12, 5920 (2016).

[1]

[2]

[3]

[4]

@@ Line 1: / Line 1: @@
-The many-body dispersion energy method (MBD@rsSCS) of Tkatchenko et al.<ref name="tkatchenko2012"/><ref name="tkatchenko2014"/>is based on the random phase expression for the correlation energy
+The many-body dispersion energy method (MBD@rsSCS) of Tkatchenko et al.{{cite|tkatchenko:prl:12}}{{cite|ambrosetti:jcp:14}} is based on the random-phase expression for the correlation energy
-<math> E_c = \int_{0}^{\infty} \frac{d\omega}{2\pi} \mathrm{Tr}\left\{\mathrm{ln} (1-v\chi_0(i\omega))+v\chi_0(i\omega) \right\} </math>
+:<math> E_c = \int_{0}^{\infty} \frac{d\omega}{2\pi} \mathrm{Tr}\left\{\mathrm{ln} (1-v\chi_0(i\omega))+v\chi_0(i\omega) \right\} </math>
-whereby the response function <math>\chi_0</math> is approximated by a sum of atomic contributions represented by quantum harmonic oscillators.
+whereby the response function <math>\chi_0</math> is approximated by a sum of atomic contributions represented by quantum harmonic oscillators. The expression for the dispersion energy used in the VASP k-space implementation of the MBD@rsSCS method (see reference {{cite|bucko:jpcm:16}} for details) is as follows:
-The expression for dispersion energy used in our k-space implementation
-of the MBD@rsSCS method (see Ref.~\cite{Bucko:16} for details) is as follows
-\begin{equation}\label{eq_energy_k1}
-E_{\text{disp}} = -\int_{\text{FBZ}}\frac{d{\mathbf{k}}}{v_{\text{FBZ}}}
-\int_0^{\infty}
-{\frac{d\omega}{2\pi}} \, {\text{Tr}}\left \{ \text{ln} \left (
-{\mathbf{1}}-{\mathbf{A}}^{(0)}_{LR}(\omega)
-{\mathbf{T}}_{LR}({\mathbf{k}}) \right ) \right \},
-\end{equation}
-where ${\mathbf{A}}_{LR}$ is the frequency-dependent polarizability
-matrix and ${\mathbf{T}}_{LR}$ is the long-range interaction tensor,
-which describes the interaction of the screened polarizabilities
-embedded in the system in a given {geometrical } arrangement.
-The components of ${\mathbf{A}}_{LR}$ are obtained using
-an atoms-in-molecule approach as employed in the pairwise
-Tkatchenko-Scheffler method (see
-Ref.~\cite{Ambrosetti:14,Bucko:16} for details); the input reference
-data for non-interacting atoms can be optionally defined
-via parameters {\tt VDW\_alpha}, {\tt VDW\_C6}, {\tt VDW\_R0}
-(described in sec.~\ref{sec:vdwTS}).
-%The input reference
-%data for non-interacting atoms can be optionally defined
-This method has one free parameter ($\beta$) that must be adjusted
-for each exchange-correlation functional. The default value of
-$\beta$ (0.83) corresponds to PBE functional;
-if other functional is used,
-the value of $\beta$ must be specified via {\tt VDW\_SR}
-in INCAR.
-The MBD@rsSCS method is invoked by
-defining {\tt IVDW}=202. Optionally, the following
-parameters can be user-defined:\\
-\begin{tabular}{rll}
+:<math>E_{\mathrm{disp}} = -\int_{\mathrm{FBZ}}\frac{d{\mathbf{k}}}{v_{\mathrm{FBZ}}} \int_0^{\infty} {\frac{d\omega}{2\pi}} \, {\mathrm{Tr}}\left \{ \mathrm{ln} \left ({\mathbf{1}}-{\mathbf{A}}^{(0)}_{LR}(\omega) {\mathbf{T}}_{LR}({\mathbf{k}}) \right ) \right \} </math>
-         {\tt VDW\_SR} & = 0.83& scaling parameter $\beta$ \\
-         {\tt LVDWEXPANSION} &=.FALSE.$|$.TRUE. & write the two- to six- body contributions to MBD\\
-                       & &  dispersion energy in the output file (OUTCAR) - no$|$yes\\
-         {\tt LSCSGRAD}& =.TRUE.$|$.FALSE.& compute gradients - yes$|$no\\
-        %{\tt VDW\_alpha}, {\tt VDW\_C6}, {\bf VDW\_R0} & & atomic reference, see Sec.~\ref{sec:vdwTS}.
- \end{tabular}
-\\
-\hspace{5mm}
-\\
-\noindent Details of implementation of the MBD@rsSCS method in VASP
-are presented in
-J. Phys: Condens. Matter 28, 045201 (2016).
-\\
-\hspace{5mm}
-\\
-\noindent IMPORTANT NOTES:
-\begin{itemize}
-\item
-this method requires the use of POTCAR files from the
-PAW dataset version 52 or later
-\item
-the input reference
-data for non-interacting atoms are available only for elements
-of the first six rows of periodic table except of lanthanides.
-If the system contains other elements, the user must provide
-the free-atomic parameters for all atoms in the system
-via {\tt VDW\_alpha}, {\tt VDW\_C6}, {\tt VDW\_R0}
-(described in sec.~\ref{sec:vdwTS})
-defined in the INCAR file.
-\item
-the charge-density dependence of gradients is neglected
-\item
-this method is incompatible with the setting {\tt ADDGRID=.TRUE.}
-\item
-it is essential that a sufficiently dense FFT grid (controlled via {\tt NGFX(Y,Z)}) is
-used in the DFT-TS - we strongly recommend to use {\tt PREC=Accurate} for this type of calculations
-(in any case, avoid using {\tt PREC=Low}).
-\item
-the method has sometimes numerical problems if highly
-polarizable atoms are located at short distances.
-In such a case the calculation terminates
-with an error message ({\tt Error(vdw\_tsscs\_range\_separated\_k): d\_lr(pp)<=0 }).
-Note that this problem is not caused by a bug but rather it is
-due to a limitation of the underlying physical model.
-\item
-analytical gradients of energy are implemented
-(fore details see Ref.~\cite{Bucko:16}) and hence the atomic and lattice
-relaxations can be performed
-\item
-due to the long-range nature of dispersion interactions, the convergence of energy
-with respect to the number of k-points should be carefully examined
-\item
-a default value for the free-parameter of this method ({\tt VDW\_SR}=0.83)
-is available only for the PBE functional. If the functional other than PBE is used,
-the value of {\tt VDW\_SR}
-must be specified in INCAR.
-\end{itemize}
-== Related Tags and Sections ==
+where <math>{\mathbf{A}}_{LR}</math> is the frequency-dependent polarizability matrix and <math>\mathbf{T}_{LR}</math> is the long-range interaction tensor, which describes the interaction of the screened polarizabilities
+embedded in the system in a given geometrical arrangement. The components of <math>\mathbf{A}_{LR}</math> are obtained using an atoms-in-molecule approach as employed in the pairwise {{TAG|Tkatchenko-Scheffler method}} (see
+references {{cite|ambrosetti:jcp:14}}{{cite|bucko:jpcm:16}} for details). The input reference data for non-interacting atoms can be optionally defined via the parameters {{TAG|VDW_ALPHA}}, {{TAG|VDW_C6}}, and {{TAG|VDW_R0}}
+(described by the {{TAG|Tkatchenko-Scheffler method}}). This method has one free parameter (<math>\beta</math>) that must be adjusted for each exchange-correlation functional. The default value of <math>\beta</math>=0.83 corresponds to the PBE functional ({{TAG|GGA}}{{=}}PE). If another functional is used, the value of <math>\beta</math> must be specified via {{TAG|VDW_SR}} in the {{TAG|INCAR}} file. The MBD@rsSCS method is invoked by setting {{TAG|IVDW}}=202. Optionally, the following parameters can be user-defined (the given values are the default ones):
+*{{TAG|VDW_SR}}=0.83 : scaling parameter <math>\beta</math>
+*{{TAG|LVDWEXPANSION}}=.FALSE. : writes the two- to six-body contributions to the  MBD dispersion energy in the {{TAG|OUTCAR}} ({{TAG|LVDWEXPANSION}}=''.TRUE.'')
+*{{TAG|LSCSGRAD}}=.TRUE. : compute gradients (or not)
+*{{TAG|VDW_ALPHA}}, {{TAG|VDW_C6}}, {{TAG|VDW_R0}} : atomic reference (see also {{TAG|Tkatchenko-Scheffler method}})
+*{{TAG|ITIM}}=-1: if set to +1, apply eigenvalue remapping to avoid unphysical cases where the eigenvalues of the matrix
+<math>\left(1-\mathbf{A}^{(0)}_{LR}(\omega) {\mathbf{T}}_{LR}({\mathbf{k}})\right) </math>are non-positive, see reference<ref>[https://pubs.acs.org/doi/abs/10.1021/acs.jctc.6b00925 T. Gould, S. Lebègue, J. G. Ángyán, and T. Bučko, J. Chem. Theory Comput. 12, 5920 (2016).]</ref> for details
+Details of the implementation of the MBD@rsSCS method in VASP are presented in reference {{cite|bucko:jpcm:16}}.
+{{NB|mind|
+*This method requires the use of {{TAG|POTCAR}} files from the PAW dataset version 52 or later.
+*The input reference data for non-interacting atoms are available only for elements of the first six rows of the periodic table except of the lanthanides. If the system contains other elements, the user has to provide the free-atomic parameters for all atoms in the system via {{TAG|VDW_ALPHA}}, {{TAG|VDW_C6}} and {{TAG|VDW_R0}} (described by the {{TAG|Tkatchenko-Scheffler method}}) defined in the {{TAG|INCAR}} file.
+*The charge-density dependence of gradients is neglected.
+*This method is incompatible with the setting {{TAG|ADDGRID}}{{=}}''.TRUE.''.
+*It is essential that a sufficiently dense FFT grid (controlled via {{TAG|NGXF}}, {{TAG|NGYF}} and {{TAG|NGZF}} ) is used in the {{TAG|Tkatchenko-Scheffler method}} calculation. We strongly recommend to use {{TAG|PREC}}{{=}}''Accurate'' for this type of calculations (in any case, avoid using {{TAG|PREC}}{{=}}''Low'').
+*The method sometimes has numerical problems if highly polarizable atoms are located at short distances. In such a case the calculation terminates with an error message ''Error(vdw\_tsscs\_range\_separated\_k): d\_lr(pp)<{{=}}0''. Note that this problem is not caused by a bug, but rather it is due to a limitation of the underlying physical model.
+*Analytical gradients of the energy are implemented (fore details see reference {{cite|bucko:jpcm:16}}) and hence the atomic and lattice relaxations can be performed.
+*Due to the long-range nature of dispersion interactions, the convergence of energy with respect to the number of k-points should be carefully examined.
+*A default value for the free-parameter of this method is available only for the PBE ({{TAG|VDW_SR}}{{=}}0.83), PBE0 ({{TAG|VDW_SR}}{{=}}0.85), HSE06 ({{TAG|VDW_SR}}{{=}}0.85), B3LYP ({{TAG|VDW_SR}}{{=}}0.64), and SCAN ({{TAG|VDW_SR}}{{=}}1.12) functionals. If any other functional is used, the value of {{TAG|VDW_SR}} must be specified in the {{TAG|INCAR}} file.}}
+== Related tags and articles ==
+{{TAG|VDW_ALPHA}},
+{{TAG|VDW_C6}},
+{{TAG|VDW_R0}},
+{{TAG|VDW_SR}},
+{{TAG|LVDWEXPANSION}},
+{{TAG|LSCSGRAD}},
 {{TAG|IVDW}},
-{{TAG|IALGO}},
+{{TAG|Tkatchenko-Scheffler method}},
-{{TAG|DFT-D2}},
+{{TAG|Self-consistent screening in Tkatchenko-Scheffler method}},
-{{TAG|DFT-D3}}
+{{TAG|Tkatchenko-Scheffler method with iterative Hirshfeld partitioning}},
+{{TAG|Many-body dispersion energy with fractionally ionic model for polarizability}}
 == References ==
-<references>
+<references/>
-<ref name="tkatchenko2012">[http://journals.aps.org/prl/abstract/10.1103/PhysRevLett.108.236402 A. Tkatchenko, R. A. Di Stasio, R. Car, and M. Scheffler, Phys. Rev. Lett. 108, 236402 (2012).]</ref>
-<ref name="tkatchenko2014">[http://aip.scitation.org/doi/full/10.1063/1.4865104 A. Ambrosetti, A. M. Reilly, R. A. DiStasio, J. Chem. Phys. 140, 018A508 (2014).]</ref>
-<ref name="kerber">[http://onlinelibrary.wiley.com/doi/10.1002/jcc.21069/abstract Kerber and J. Sauer, J. Comp. Chem. 29, 2088 (2008).]</ref>
-</references>
 ----
-[[The_VASP_Manual|Contents]]
-[[Category:INCAR]]
+[[Category:Exchange-correlation functionals]][[Category:van der Waals functionals]][[Category:Theory]]